XJavaDoc - 1.1

Clover coverage report - XJavaDoc - 1.1
Coverage timestamp: Sun Oct 3 2004 19:56:54 BST
FRAMES NO FRAMES
file stats:	LOC:	969		Methods:	40
	NCLOC:	534		Classes:	3
30 day Evaluation Version distributed via the Maven Jar Repository. Clover is not free. You have 30 days to evaluate it. Please visit http://www.thecortex.net/clover to obtain a licensed version of Clover
Source file
Conditionals
Statements
Methods
TOTAL
XJavaDoc.java
57.8%
65.8%
62.5%
63.3%
 /*
  * Copyright (c) 2001-2003 The XDoclet team
  * All rights reserved.
  */
 package xjavadoc;
 
 import xjavadoc.filesystem.AbstractFile;
 import xjavadoc.tags.TagIntrospector;
 
 import java.io.PrintStream;
 import java.util.*;
 
 import org.apache.commons.collections.Predicate;
 import org.apache.commons.collections.CollectionUtils;
 
 /**
  * This class represents the entry-point for xjavadoc classes. Come here to get
  * classes and packages.
  *
  * @author    Aslak Hellesøy
  * @created   3. januar 2002
  */
 public final class XJavaDoc
 {
     /**
      * Indicates whether this XJavaDoc was built with or without unicode support
      */
     public final static String IS_UNICODE = "@IS_UNICODE@";
     /**
      * messgage level for reporting unqualified classes when there are no imported
      * packages
      */
     public final static int NO_IMPORTED_PACKAGES = 0;
     /**
      * messgage level for reporting unqualified classes when there are one or more
      * imported packages
      */
     public final static int ONE_OR_MORE_IMPORTED_PACKAGES = 1;
 
     private final static List PRIMITIVES = Collections.unmodifiableList( Arrays.asList( new String[]
         {"void", "java.lang.Void.TYPE",
         "byte", "java.lang.Byte.TYPE",
         "short", "java.lang.Short.TYPE",
         "int", "java.lang.Integer.TYPE",
         "long", "java.lang.Long.TYPE",
         "char", "java.lang.Character.TYPE",
         "float", "java.lang.Float.TYPE",
         "double", "java.lang.Double.TYPE",
         "boolean", "java.lang.Boolean.TYPE"
         } ) );
 
     private static HashMap _primitiveClasses = new HashMap();
     private final Map  _binaryClasses = new HashMap();
     private final Map  _unknownClasses = new HashMap();
     private final Map  _packages = new HashMap();
     private final Set  _sourceSets = new HashSet();
 
     /**
      * This map contains all the classes that were passed in the source sets,
      * excluding all inner classes.
      */
     private final Map  _sourceSetSourceClasses = new HashMap();
 
     /**
      * This map contains the same classes as _sourceSetSourceClasses, but it is
      * also populated with additional classes that may be accessed that were not in
      * the source sets. This can be superclasses, classes referenced in methods,
      * import statements etc.
      */
     private final Map  _allSourceClasses = new HashMap();
 
     private final Set  _sourceSetClassNames = new TreeSet();
 
     private final Map  _properties = new HashMap();
 
     private final Map  _abstractFileClasses = new HashMap();
 
     private final XTagFactory _tagFactory = new XTagFactory();
 
     /**
      * This map contains all the classes that were passed in the source sets,
      * including all inner classes.
      */
     private Collection _sourceSetSourceClassesWithInnerClasses = new ArrayList();
 
     /**
      * Remember when we're born. We hate sources that are born after us and we
      * pretend they don't exist, because if we don't we'll have very unpredictable
      * behaviour. Well, since we have editor plugin and this is singleton object,
      * we have to relax our policy on this. Or we will have to restart editor every
      * time we like to tag the same class again...
      */
     private long       _birthday;
 
     /**
      * info, error and warning messages related to parsing and class qualification
      */
     private List       _logMessages = new LinkedList();
 
     /**
      * sticky parameter for useNodeParser. _useNodeParser = true -> slower parsing,
      * but modifiable javaodcs.
      */
     private boolean    _useNodeParser = false;
 
     /** charset for source file */
     private String _encoding = null;
     
     /** charset for generated file */
     private String _docEncoding = null;
     
     public XJavaDoc()
     {
         _birthday = System.currentTimeMillis();
         for( int i = 0; i < PRIMITIVES.size(); i += 2 )
         {
             addPrimitive( ( String ) PRIMITIVES.get( i ), ( String ) PRIMITIVES.get( i + 1 ) );
         }
     }
 
     /**
      * Dump to sytem out the status of XJavadoc.
      */
     public static void printMemoryStatus()
     {
         System.out.println( "ParameterImpl instances:   " + ParameterImpl.instanceCount );
         System.out.println( "MethodImpl instances:      " + MethodImpl.instanceCount );
         System.out.println( "ConstructorImpl instances: " + ConstructorImpl.instanceCount );
         System.out.println( "SimpleNode instances:      " + SimpleNode.instanceCount );
         System.out.println( "SourceClass instances:     " + SourceClass.instanceCount );
         System.out.println( "XDoc instances:            " + XDoc.instanceCount );
         System.out.println( "DefaultXTag instances:     " + DefaultXTag.instanceCount );
         System.out.println( "BinaryClass instances:     " + BinaryClass.instanceCount );
         System.out.println( "UnknownClass instances:    " + UnknownClass.instanceCount );
 
         System.out.println( "Total memory:    " + ( Runtime.getRuntime().totalMemory() / ( 1024 * 1024 ) ) );
         System.out.println( "Free memory:    " + Runtime.getRuntime().freeMemory() / ( 1024 * 1024 ) );
     }
 
     /**
      * Replaces <code>${xxx}</code> style constructions in the given value with the
      * string value of the corresponding data types. NOTE: This method was taken
      * directly from Ant's source code (org.apache.tools.ant.ProjectHelper) and
      * modified slightly to use a Map instead of a HashMap.
      *
      * @param value  The string to be scanned for property references. May be
      *      <code>null</code> , in which case this method returns immediately with
      *      no effect.
      * @param keys   Mapping (String to String) of property names to their values.
      *      Must not be <code>null</code>.
      * @return       the original string with the properties replaced, or <code>null</code>
      *      if the original string is <code>null</code>.
      */
     public static String replaceProperties( String value, Map keys )
     {
         if( value == null )
         {
             return null;
         }
 
         ArrayList fragments = new ArrayList();
         ArrayList propertyRefs = new ArrayList();
 
         parsePropertyString( value, fragments, propertyRefs );
 
         StringBuffer sbuf = new StringBuffer();
         Iterator i = fragments.iterator();
         Iterator j = propertyRefs.iterator();
 
         while( i.hasNext() )
         {
             String fragment = ( String ) i.next();
 
             if( fragment == null )
             {
                 String propertyName = ( String ) j.next();
 
                 fragment = ( keys.containsKey( propertyName ) ) ? ( String ) keys.get( propertyName )
                      : "${" + propertyName + '}';
             }
             sbuf.append( fragment );
         }
 
         return sbuf.toString();
     }
 
     /**
      * Parses a string containing <code>${xxx}</code> style property references
      * into two lists. The first list is a collection of text fragments, while the
      * other is a set of string property names. <code>null</code> entries in the
      * first list indicate a property reference from the second list. NOTE: This
      * method was taken directly from Ant's source code
      * ({@link org.apache.tools.ant.ProjectHelper}) with the BuildException throwing
      * removed.
      *
      * @param value         Text to parse. Must not be <code>null</code>.
      * @param fragments     List to add text fragments to. Must not be <code>null</code>.
      * @param propertyRefs  List to add property names to. Must not be <code>null</code>.
      */
     public static void parsePropertyString( String value, List fragments, List propertyRefs )
     {
         int prev = 0;
         int pos;
 
         while( ( pos = value.indexOf( '$', prev ) ) >= 0 )
         {
 
             if( pos > 0 )
             {
                 String fragment = value.substring( prev, pos );
 
                 fragments.add( fragment );
             }
 
             if( pos == ( value.length() - 1 ) )
             {
                 fragments.add( "$" );
                 prev = pos + 1;
             }
             else if( value.charAt( pos + 1 ) != '{' )
             {
                 fragments.add( value.substring( pos, pos + 1 ) );
                 prev = pos + 1;
             }
             else
             {
                 int endName = value.indexOf( '}', pos );
 
                 if( endName < 0 )
                 {
                     // In Ant this is a BuildException condition as its an
                     // incomplete property reference. Here we'll leave it
                     // in the output string
                     String fragment = value.substring( pos );
 
                     fragments.add( fragment );
                     continue;
                 }
 
                 String propertyName = value.substring( pos + 2, endName );
 
                 fragments.add( null );
                 propertyRefs.add( propertyName );
                 prev = endName + 1;
             }
         }
 
         if( prev < value.length() )
         {
             String fragment = value.substring( prev );
 
             fragments.add( fragment );
         }
     }
 
     /**
      * Gets the Primitive attribute of the XJavaDoc class
      *
      * @param name  Describe what the parameter does
      * @return      The Primitive value
      */
     static Primitive getPrimitive( String name )
     {
         return ( Primitive ) _primitiveClasses.get( name );
     }
 
     /**
      * Gets the file the pe is contained in. Note: calling this method with a
      * XProgramElement not from source (but from a binary or unknown class) will
      * result in a ClassCastException, so don't do that. This method is only used
      * for diagnostics in error reporting.
      *
      * @param pe  the program element we want the source for.
      * @return    the file the program element is contained in.
      */
     static AbstractFile getSourceFileFor( XProgramElement pe )
     {
         SourceClass containingClass = null;
 
         if( !( pe instanceof SourceClass ) )
         {
             // pe is a field, method or constructor. get the surrounding class
             containingClass = ( SourceClass ) pe.getContainingClass();
         }
         else
         {
             containingClass = ( SourceClass ) pe;
         }
         // in case the class is an inner class, loop until we have the outermost.
         while( containingClass.getContainingClass() != null )
         {
             containingClass = ( SourceClass ) containingClass.getContainingClass();
         }
         return containingClass.getFile();
     }
 
     /**
      * Describe the method
      *
      * @param name  Describe the method parameter
      * @param type  The feature to be added to the Primitive attribute
      */
     private final void addPrimitive( String name, String type )
     {
         _primitiveClasses.put( name, new Primitive( this, name, type ) );
     }
 
     public Collection getSourceClasses( Predicate predicate )
     {
         return CollectionUtils.select( getSourceClasses(), predicate );
     }
 
     /**
      * Returns all classes in the registered source sets, including inner classes
      *
      * @return   A Collection of XClass
      */
     public Collection getSourceClasses()
     {
         if( _sourceSetSourceClassesWithInnerClasses.isEmpty() )
         {
             // Add the regular classes
             _sourceSetSourceClassesWithInnerClasses.addAll( getOuterSourceClasses() );
 
             // Add inner classes
             for( Iterator outers = getOuterSourceClasses().iterator(); outers.hasNext();  )
             {
                 addInnerClassRecursive( (XClass) outers.next(), _sourceSetSourceClassesWithInnerClasses );
             }
         }
         return Collections.unmodifiableCollection( _sourceSetSourceClassesWithInnerClasses );
     }
 
     /**
      * Returns the packages of the specified classes during parsing.
      *
      * @return   Describe the return value
      */
     public Collection getSourcePackages()
     {
         Set packages = new TreeSet();
         Collection classes = getSourceClasses();
 
         for( Iterator i = classes.iterator(); i.hasNext();  )
         {
             packages.add( ((XClass)i.next()).getContainingPackage() );
         }
 
         return Collections.unmodifiableCollection( packages );
     }
 
     public Map getPropertyMap()
     {
         return Collections.unmodifiableMap( _properties );
     }
 
     /**
      * Get the XClass corresponding to the qualifiedName. This can be a class from
      * source, a precompiled class or a primitive. UnknownClass is never returned
      * from this method, unless it has been previously instantiated. <b>IMPORTANT:
      * </b> If the Java source can be located, an instance of SourceClass will be
      * returned. -Even if that file was not among the files in the fileset or
      * sourceset. <b>IMPORTANT: </b> If qualifiedName represents an inner class, an
      * UnknownClass will be returned unless the enclousing "outer" class has been
      * resolved first.
      *
      * @param qualifiedName  Fully qualified class name
      * @return               The XClass value
      */
     public XClass getXClass( String qualifiedName )
     {
         if( qualifiedName.equals( "" ) )
         {
             throw new IllegalStateException( "Classname can't be empty String" );
         }
 
         XClass result = null;
         Primitive primitive;
         SourceClass sourceClass;
         BinaryClass binaryClass;
         UnknownClass unknownClass;
 
         // first, check all caches
         if( ( primitive = getPrimitive( qualifiedName ) ) != null )
         {
             result = primitive;
         }
         else if( ( sourceClass = ( SourceClass ) _allSourceClasses.get( qualifiedName ) ) != null )
         {
             result = sourceClass;
         }
         else if( ( binaryClass = ( BinaryClass ) _binaryClasses.get( qualifiedName ) ) != null )
         {
             result = binaryClass;
         }
         else if( ( unknownClass = ( UnknownClass ) _unknownClasses.get( qualifiedName ) ) != null )
         {
             result = unknownClass;
         }
         else
         {
             // Let's try to read the class from source
             if( sourceExists( qualifiedName ) )
             {
                 // The source exists. Let's parse it.
                 sourceClass = scanAndPut( qualifiedName );
                 result = sourceClass;
             }
             else
             {
                 // Couldn't find the class among the sources.
                 // Try a BinaryClass
                 Class clazz = getClass( qualifiedName );
 
                 if( clazz != null )
                 {
                     binaryClass = new BinaryClass( this, clazz );
                     _binaryClasses.put( qualifiedName, binaryClass );
                     result = binaryClass;
                 }
                 else
                 {
                     // Binary didn't exist either. Return an UnknownClass
                     result = new UnknownClass( this, qualifiedName );
                     _unknownClasses.put( qualifiedName, result );
                 }
             }
         }
         return result;
     }
 
     /**
      * Returns the package. The package must be one of the packages of the sources.
      * Other packages, such as java.lang are not available.
      *
      * @param packageName
      * @return             an XPackage, or null if the packageName is not among the
      *      sources.
      */
     public XPackage getSourcePackage( String packageName )
     {
         // This is not optimal, but this method is primarily used for testing.
         for( Iterator i = getSourcePackages().iterator(); i.hasNext();  )
         {
             XPackage p = ( XPackage ) i.next();
 
             if( p.getName().equals( packageName ) )
             {
                 return p;
             }
         }
         return null;
     }
 
     /**
      * This method can be called prior to parsing so that all classes are parsed
      * with AST (to make it possible to write the source back to disk)
      *
      * @param useNodeParser
      */
     public void setUseNodeParser( boolean useNodeParser )
     {
         _useNodeParser = useNodeParser;
     }
 
     public void setPropertyMap( Map properties )
     {
         _properties.putAll( properties );
     }
 
     /**
      * Resets the caches.
      *
      * @param resetTimeStamp  true if timestamps should be reset too.
      */
     public void reset( boolean resetTimeStamp )
     {
         for( Iterator iterator =  _packages.values().iterator(); iterator.hasNext();  )
         {
             XPackage xPackage = (XPackage) iterator.next();
 
             for( Iterator i = xPackage.getClasses().iterator(); i.hasNext();  )
             {
                 AbstractClass clazz = ( AbstractClass ) i.next();
 
                 clazz.reset();
             }
         }
         _binaryClasses.clear();
         _unknownClasses.clear();
         _packages.clear();
         _sourceSets.clear();
         _sourceSetSourceClasses.clear();
         _sourceSetClassNames.clear();
         _allSourceClasses.clear();
         _sourceSetSourceClassesWithInnerClasses.clear();
 
         _logMessages.clear();
         _properties.clear();
         _abstractFileClasses.clear();
 
         //_primitiveClasses = null;
 
         //AbstractProgramElement.NULL_XDOC = null;
 
         // if we start new life, we can as well get new birth certificate,
         // so classes saved in previous life can be loaded again without
         // hating them :)
         if( resetTimeStamp )
         {
             _birthday = System.currentTimeMillis();
         }
     }
 
     /**
      * Prints the log messages encountered during parsing
      *
      * @param out
      * @param level
      */
     public void printLogMessages( PrintStream out, int level )
     {
         boolean printedHeader = false;
 
         for( Iterator i = _logMessages.iterator(); i.hasNext();  )
         {
             LogMessage m = ( LogMessage ) i.next();
 
             if( m._level == level )
             {
                 if( !printedHeader )
                 {
                     if( level == ONE_OR_MORE_IMPORTED_PACKAGES )
                     {
                         // Could be an inner class too!!!
                         out.println( "WARNING: Some classes refer to other classes that were not found among the sources or on the classpath." );
                         out.println( "         (Perhaps the referred class doesn't exist? Hasn't been generated yet?)" );
                         out.println( "         The referring classes do not import any fully qualified classes matching these classes." );
                         out.println( "         Since at least one package is imported, it is impossible for xjavadoc to figure out" );
                         out.println( "         what package the referred classes belong to. The classes are:" );
                     }
                     else
                     {
                         out.println( "INFO:    Some classes refer to other classes that were not found among the sources or on the classpath." );
                         out.println( "         (Perhaps the referred class doesn't exist? Hasn't been generated yet?)" );
                         out.println( "         The referring classes do not import any fully qualified classes matching these classes." );
                         out.println( "         However, since no packages are imported, xjavadoc has assumed that the referred classes" );
                         out.println( "         belong to the same package as the referring class. The classes are:" );
                     }
                     printedHeader = true;
                 }
                 out.println( m._sourceClass.getFile().getPath() + " --> " + m._unqualifiedClassName + " qualified to " + m._unknownClass.getQualifiedName() );
             }
         }
     }
 
     /**
      * Adds a new set of java sources to be parsed.
      *
      * @param sourceSet  a set of java sources.
      */
     public void addSourceSet( SourceSet sourceSet )
     {
         _sourceSets.add( sourceSet );
         for( int j = 0; j < sourceSet.getSize(); j++ )
         {
             String qualifiedName = sourceSet.getQualifiedName( j );
 
             if( _sourceSetClassNames.contains( qualifiedName ) )
             {
                 String msg = "The class \"" + qualifiedName + "\" occurs in more than one fileset. That's illegal.";
 
                 System.err.println( msg );
             }
             _sourceSetClassNames.add( qualifiedName );
         }
     }
 
     public void addAbstractFile( String qualifiedName, AbstractFile file )
     {
         _abstractFileClasses.put( qualifiedName, file );
 
         if( _sourceSetClassNames.contains( qualifiedName ) )
         {
             String msg = "The class \"" + qualifiedName + "\" occurs in more than one fileset. That's illegal.";
 
             System.err.println( msg );
         }
         _sourceSetClassNames.add( qualifiedName );
     }
 
     /**
      * Describe what the method does
      *
      * @param className                qualified name of class
      * @param tagName                  tag name
      * @param parameterName            parameter name
      * @param parameterValue           new parameter value
      * @param tagIndex                 index of tag (??)
      * @param methodNameWithSignature  method name followed by signature. no
      *      spaces. Ex:<br>
      *      <code>doIt(java.lang.String,int)</code>
      * @return                         the class corresponding to the className
      * @exception XJavaDocException    If the tag for some reason couldn't be
      *      updated
      */
     public XClass updateMethodTag(
         String className,
         String methodNameWithSignature,
         String tagName,
         String parameterName,
         String parameterValue,
         int tagIndex
          ) throws XJavaDocException
     {
         XClass clazz = getXClass( className );
         XMethod method = clazz.getMethod( methodNameWithSignature );
 
         XDoc doc = method.getDoc();
 
         doc.updateTagValue( tagName, parameterName, parameterValue, tagIndex );
 
         return clazz;
     }
 
     /**
      * Describe what the method does
      *
      * @param className              Describe what the parameter does
      * @param tagName                Describe what the parameter does
      * @param parameterName          Describe what the parameter does
      * @param parameterValue         Describe what the parameter does
      * @param tagIndex               Describe what the parameter does
      * @return                       Describe the return value
      * @exception XJavaDocException  Describe the exception
      */
     public XClass updateClassTag(
         String className,
         String tagName,
         String parameterName,
         String parameterValue,
         int tagIndex
          ) throws XJavaDocException
     {
         XClass clazz = getXClass( className );
         XDoc doc = clazz.getDoc();
 
         doc.updateTagValue( tagName, parameterName, parameterValue, tagIndex );
         return clazz;
     }
 
     public String dereferenceProperties( String value )
     {
 
         return replaceProperties( value, _properties );
     }
 
     /**
      * @param qualifiedClassName
      * @return                    true if the class exists, either as source or
      *      binary
      */
     final boolean classExists( final String qualifiedClassName )
     {
         // See if we have the source
         if( sourceExists( qualifiedClassName ) )
         {
             return true;
         }
         // See if we kand find the class (binary)
         else if( getClass( qualifiedClassName ) != null )
         {
             return true;
         }
         else
         {
             return false;
         }
     }
 
     void logMessage( SourceClass clazz, UnknownClass unknownClass, String unqualifiedClassName, int level )
     {
         _logMessages.add( new LogMessage( clazz, unknownClass, unqualifiedClassName, level ) );
     }
 
     /**
      * Describe the method
      *
      * @param packageName  Describe the method parameter
      * @return             Describe the return value
      */
     XPackage addPackageMaybe( String packageName )
     {
         XPackage result = ( XPackage ) _packages.get( packageName );
 
         if( result == null )
         {
             // The package doesn't exist yet. Add it then
             result = new XPackage( packageName );
             _packages.put( packageName, result );
         }
         return result;
     }
 
     /**
      * Adds a source class to the cache. This method is also called from JavaParser
      * when parsing inner classes.
      *
      * @param sourceClass  Describe the method parameter
      */
     void addSourceClass( SourceClass sourceClass )
     {
         _allSourceClasses.put( sourceClass.getQualifiedName(), sourceClass );
 
         // Also add it to _sourceSetSourceClasses if it was among the source sets
         // or if it is an "extra" class (this is due to XJD-8)
         if( _sourceSetClassNames.contains( sourceClass.getQualifiedName() ) || sourceClass.isExtraClass() )
         {
             _sourceSetSourceClasses.put( sourceClass.getQualifiedName(), sourceClass );
         }
     }
 
     /**
      * Returns the Class with the given name, or null if unknown.
      *
      * @param qualifiedName  Describe what the parameter does
      * @return               The Class value
      */
     private final Class getClass( String qualifiedName )
     {
         try
         {
             return Class.forName( qualifiedName, false, getClass().getClassLoader() );
         }
         catch( Throwable e )
         {
             // e can be LinkageError, ClassNotFoundException or ExceptionInInitializerError
             // We don't care what we get. If the forName fails, we don't have a class to return
             return null;
         }
     }
 
     /**
      * Returns all classes in the registered source sets
      *
      * @return   A Collection of XClass
      */
     private Collection getOuterSourceClasses()
     {
         if( _sourceSetSourceClasses.isEmpty() )
         {
             for( Iterator i = _sourceSetClassNames.iterator(); i.hasNext();  )
             {
                 String qualifiedName = ( String ) i.next();
 
                 /*
                  * This will result in the class being added to
                  * _sourceSetSourceClasses AND _allSourceClasses
                  */
                 getXClass( qualifiedName );
             }
 
             for( Iterator iterator = _abstractFileClasses.keySet().iterator(); iterator.hasNext();  )
             {
                 String fqcn = ( String ) iterator.next();
 
                 getXClass( fqcn );
             }
         }
 
         //a new collection should be created, becuase we might be looping over classes and generatePerClass for each
         //one, now if a new class is discovered and registered (maybe we are analyzing a new class, maybe a template
         //is now interested in superclass of a class, maybe ...), we'll get a ConcurrentModificationException. To prevent
         //it we need to looping over a new collection (initiated from XJavaDoc mostly).
         Collection new_collection = new ArrayList( _sourceSetSourceClasses.values() );
 
         return Collections.unmodifiableCollection( new_collection );
     }
 
     /**
      * Gets the SourceFile attribute of the XJavaDoc object
      *
      * @param qualifiedName  Describe what the parameter does
      * @return               The SourceFile value
      */
     private AbstractFile getSourceFile( String qualifiedName )
     {
         // loop over all SourceSets. If a source is found more than once -> bang!
         AbstractFile found = null;
 
         for( Iterator i = _sourceSets.iterator(); i.hasNext();  )
         {
             SourceSet sourceSet = ( SourceSet ) i.next();
             AbstractFile javaFile = sourceSet.getSourceFile( qualifiedName );
 
             if( javaFile != null )
             {
                 // isn't this an impossible situation?  Have a look at addSourceSet - we check
                 // there to ensure that no classes are added twice.....
 //                if( found != null && !found.getAbsolutePath().equals( javaFile.getAbsolutePath() ) )
 //                {
 //                    throw new IllegalStateException( "Ambiguous sources for " + qualifiedName + " : " + found.getAbsolutePath() + " or " + javaFile.getAbsolutePath() );
 //                }
                 found = javaFile;
             }
         }
         return found;
     }
 
     /**
      * Recursively adds inner classes to a collection
      *
      * @param outer  The feature to be added to the InnerClassRecursive attribute
      * @param c      The feature to be added to the InnerClassRecursive attribute
      */
     private void addInnerClassRecursive( XClass outer, Collection c )
     {
         for( Iterator inners = outer.getInnerClasses().iterator(); inners.hasNext();  )
         {
             XClass inner = (XClass) inners.next();
 
             c.add( inner );
             addInnerClassRecursive( inner, c );
         }
     }
 
     /**
      * Checks is the source exists
      *
      * @param qualifiedName  the class to check for
      * @return               true if source exists.
      */
     private boolean sourceExists( String qualifiedName )
     {
         /*
          * When used with XDoclet, some classes might be resolved by xjavadoc
          * after they are generated by XDoclet.
          * (An example is e.g. a primary key
          * class that doesn't exist before XDoclet is run, and which might be
          * referenced by some of the methods in the @tagged classes).
          * We will pretend that any classes that didn't exist before xjavadoc started
          * scanning sources (generated classes) don't exist. This is to avoid modifying
          * collections that are being iterated over in parallel, as this will throw
          * ConcurrentModificationException. (Aslak)
          */
         AbstractFile sourceFile = getSourceFile( qualifiedName );
 
         if( sourceFile != null )
         {
             if( sourceFile.lastModified() > _birthday )
             {
                 // The source appeared after xjavadoc was reset. Pretend it doesn't exist.
                 System.out.println( "XJavaDoc Ignoring class " + qualifiedName + " in " + sourceFile.getPath() + ". It was generated (" + new Date( sourceFile.lastModified() ) + ") after XJavaDoc's timestamp was reset (" + new Date( _birthday ) + ")" );
                 return false;
             }
         }
 
         boolean sourceFileExists = sourceFile != null;
 
         if( !sourceFileExists )
         {
             sourceFileExists = _abstractFileClasses.containsKey( qualifiedName );
         }
 
         return sourceFileExists;
     }
 
     /**
      * Scan's a class and puts it in the cache.
      *
      * @param qualifiedName  Describe what the parameter does
      * @return               Describe the return value
      */
     private SourceClass scanAndPut( String qualifiedName )
     {
         AbstractFile sourceFile = getSourceFile( qualifiedName );
 
         sourceFile = sourceFile != null ? sourceFile : ( AbstractFile ) _abstractFileClasses.get( qualifiedName );
 
         if( sourceFile == null )
         {
             throw new IllegalStateException( "No source found for " + qualifiedName );
         }
 
         SourceClass sourceClass = new SourceClass( this, sourceFile, _useNodeParser, _tagFactory ,_encoding);
 
         // now that the entire file is parsed, validate the tags.
         if( _tagFactory.isValidating() )
         {
             sourceClass.validateTags();
         }
 
 //        addSourceClass( sourceClass );
 
         return sourceClass;
     }
 
     public XTagFactory getTagFactory() {
         return _tagFactory;
     }
 
     /**
      * Registers tags.
      *
      * @param classpath where tags are found.
      */
     public void registerTags( String classpath ) {
         new TagIntrospector().registerTags( classpath, getTagFactory() );
     }
 
     public final static class NoInnerClassesPredicate implements Predicate
     {
         public boolean evaluate( Object o )
         {
             XClass clazz = ( XClass ) o;
 
             return !clazz.isInner();
         }
     }
 
     class LogMessage
     {
         public final SourceClass _sourceClass;
         public final UnknownClass _unknownClass;
         public final String _unqualifiedClassName;
         public final int  _level;
         LogMessage( SourceClass sourceClass, UnknownClass unknownClass, String unqualifiedClassName, int level )
         {
             _sourceClass = sourceClass;
             _unknownClass = unknownClass;
             _unqualifiedClassName = unqualifiedClassName;
             _level = level;
         }
     }
 
     /**
      * Getter for source file charset.
      * @return encoding
      */
     public String getEncoding() {
         return _encoding;
     }
 
     /**
      * Setter for source file charset.
      * @param string encoding
      */
     public void setEncoding(String encoding) {
         _encoding = encoding;
     }
 
     /**
      * Getter for generated file charset.
      * @return encoding
      */
     public String getDocEncoding() {
         return _docEncoding;
     }
 
     /**
      * Setter for generated file charset.
      * @param string encoding 
      */
     public void setDocEncoding(String docencoding) {
         _docEncoding = docencoding;
     }
 
 }
 