| PROTEIN MOTIFS

Protein motif searches

Program name | Description
--- | ---
antigenic | Finds antigenic sites in proteins
digest | Reports on protein proteolytic enzyme or reagent cleavage sites
epestfind | Finds PEST motifs as potential proteolytic cleavage sites
fuzzpro | Search for patterns in protein sequences
fuzztran | Search for patterns in protein sequences (translated)
helixturnhelix | Identify nucleic acid-binding motifs in protein sequences
oddcomp | Identify proteins with specified sequence word composition
patmatdb | Searches protein sequences with a sequence motif
patmatmotifs | Scan a protein sequence with motifs from the PROSITE database
pepcoil | Predicts coiled coil regions in protein sequences
preg | Regular expression search of protein sequence(s)
pscan | Scans protein sequence(s) with fingerprints from the PRINTS database
sigcleave | Reports on signal cleavage sites in a protein sequence
echlorop | Reports presence of chloroplast transit peptides
elipop | Prediction of lipoproteins
enetnglyc | Reports N-glycosylation sites in human proteins
enetoglyc | Reports mucin type GalNAc O-glycosylation sites in mammalian proteins
enetphos | Reports ser, thr and tyr phosphorylation sites in eukaryotic proteins
eprop | Reports propeptide cleavage sites in proteins
esignalp | Reports protein signal cleavage sites
etmhmm | Reports transmembrane helices
eyinoyang | Reports O-(beta)-GlcNAc attachment sites
eiprscan | Motif detection
omeme | Motif detection
emast | Motif detection
ememe | Multiple EM for Motif Elicitation
ememetext | Multiple EM for Motif Elicitation. Text file only