############ wgEncodeHaibTfbs composite hg19 submissions ###############

2010-06-08 Mini-freeze
======================
2 need failed validation for minor things.  Pipeline closed but should load.
/cluster/data/encode/pipeline/bin/doEncodeValidate.pl -database=hg19 -configDir=/hive/groups/encode/dcc/pipeline/encpipeline_prod/config x /hive/groups/encode/dcc/pipeline/encpipeline_prod/1261 > validate_error 2>&1
view 'Peaks' has already been loaded as track 'wgEncodeHaibTfbsGm12878Taf1Pcr1xPkRep2'
grep TAF1 ../1215/*.ddf | grep GM12878
grep TAF1 ../1216/*.ddf | grep GM12878
grep TAF1 ../1217/*.ddf | grep GM12878
grep TAF1 ../1219/*.ddf | grep GM12878
grep TAF1 ../1222/*.ddf | grep GM12878
grep TAF1 ../1224/*.ddf | grep GM12878
grep TAF1 ../1225/*.ddf | grep GM12878
grep TAF1 ../1226/*.ddf | grep GM12878
grep TAF1 ../1227/*.ddf | grep GM12878
grep TAF1 ../1239/*.ddf | grep GM12878
grep TAF1 ../1240/*.ddf | grep GM12878
grep TAF1 ../1241/*.ddf | grep GM12878
data/SL588_Peaks.bed.broadPeak  Peaks   GM12878 TAF1    PCR1x   None    2       MACS    SL588
data/SL588.bam  Alignments      GM12878 TAF1    PCR1x   None    2               SL588
grep TAF1 ../1242/*.ddf | grep GM12878
grep TAF1 ../1251/*.ddf | grep GM12878
grep TAF1 ../1252/*.ddf | grep GM12878
grep TAF1 ../1253/*.ddf | grep GM12878
grep TAF1 ../1254/*.ddf | grep GM12878
# Rep 1 perhaps?
#Thanks a lot for doing this. SL588 is rep1 and SL805 is rep2 for TAF1
#in GM12878.
#Thanks,
#Preti
## Go correct 1241
rename table wgEncodeHaibTfbsGm12878Taf1Pcr1xPkRep2 to wgEncodeHaibTfbsGm12878Taf1Pcr1xPkRep1;
Query OK, 0 rows affected (0.00 sec)
cd downloadsDir
mv wgEncodeHaibTfbsGm12878Taf1Pcr1xAlnRep2.bam.gz wgEncodeHaibTfbsGm12878Taf1Pcr1xAlnRep12.bam.gz
mv wgEncodeHaibTfbsGm12878Taf1Pcr1xPkRep2.broadPeak.gz wgEncodeHaibTfbsGm12878Taf1Pcr1xPkRep1.broadPeak.gz
cd {pip}1241/out
e mdb.txt trackDb.ra unload.ra load.ra fileDb.ra
# Change all references from rep2 to rep1 for TAF1
cd ..
e *.ddf
cd ../1261
/cluster/data/encode/pipeline/bin/doEncodeValidate.pl -database=hg19 x /hive/groups/encode/dcc/pipeline/encpipeline_prod/1261 > validate_error 2>&1
doEncodeLoad.pl x /hive/groups/encode/dcc/pipeline/encpipeline_prod/1261 > load_error 2>&1
encodeStatus.pl 1261 loaded

doEncodeValidate.pl -database=hg19 -configDir=/hive/groups/encode/dcc/pipeline/encpipeline_prod/config x /hive/groups/encode/dcc/pipeline/encpipeline_prod/1258 > validate_error 2>&1
doEncodeLoad.pl x /hive/groups/encode/dcc/pipeline/encpipeline_prod/1258 > load_error 2>&1
encodeStatus.pl 1258 loaded

Things we should do before making index.html
1) Clean up wig mess
2) Update all remaps with origAssembly hg18
3) Update dateSubmitted, dateResubmitted, dateUnrestricted by getting these dates from hg18

mdbUpdate hg19 -table=tmpMdb -recreate
mdbUpdate hg19 -table=tmpMdb 1215/out/mdb.txt
mdbUpdate hg19 -table=tmpMdb 1216/out/mdb.txt
mdbUpdate hg19 -table=tmpMdb 1217/out/mdb.txt
mdbUpdate hg19 -table=tmpMdb 1219/out/mdb.txt
mdbUpdate hg19 -table=tmpMdb 1222/out/mdb.txt
mdbUpdate hg19 -table=tmpMdb 1224/out/mdb.txt
mdbUpdate hg19 -table=tmpMdb 1225/out/mdb.txt
mdbUpdate hg19 -table=tmpMdb 1226/out/mdb.txt
mdbUpdate hg19 -table=tmpMdb 1227/out/mdb.txt
mdbUpdate hg19 -table=tmpMdb 1239/out/mdb.txt
mdbUpdate hg19 -table=tmpMdb 1240/out/mdb.txt
mdbUpdate hg19 -table=tmpMdb 1241/out/mdb.txt
mdbUpdate hg19 -table=tmpMdb 1242/out/mdb.txt
mdbUpdate hg19 -table=tmpMdb 1251/out/mdb.txt
mdbUpdate hg19 -table=tmpMdb 1252/out/mdb.txt
mdbUpdate hg19 -table=tmpMdb 1253/out/mdb.txt
mdbUpdate hg19 -table=tmpMdb 1254/out/mdb.txt
mdbPrint hg19 -table=tmpMdb -all -countObjs
277 objects
mdbUpdate hg19 -table=tmpMdb -vars="grant=Myers" setVars="origAssembly=hg18" -test
277 ### Why didn't A549/GR origAssembly get into mdb??  Because we never loaded it!!!
mdbUpdate hg19 -table=tmpMdb -vars="grant=Myers" setVars="origAssembly=hg18"
 
# Clean out wigs
mdbPrint hg19 -table=tmpMdb -vars="view=RawSignal" -countObjs
60 objects
encpipeline_prod> mdbPrint hg19 -table=tmpMdb -vars="view=RawSignal" -line | grep -v wig | wl 
objects:60  vars:1320
0
They are all wigs.  Get rid of them.
mdbUpdate hg19 -table=tmpMdb -vars="view=RawSignal" -delete -test
Command would affected 1320 row(s) in hg19.tmpMdb
mdbUpdate hg19 -table=tmpMdb -vars="view=RawSignal" -delete
Affected 1320 row(s) in hg19.tmpMdb
mdbPrint hg19 -table=tmpMdb -all -countObjs
217 objects

# Add in 1258 and 1261 late
mdbUpdate hg19 -table=tmpMdb 1258/out/mdb.txt
mdbUpdate hg19 -table=tmpMdb 1261/out/mdb.txt
mdbPrint hg19 -table=tmpMdb -all -countObjs -countVars
235 objects
5092 variables

# Experiment defining vars?
mdbPrint hg18 -table=metaDb -vars="composite=wgEncodeHudsonalphaChipSeq" -countObjs -countVars
701 objects
15168 variables

# Added special command to mdbPrint!!
~/bin/x86_64/mdbPrint hg18 -table=metaDb -vars="composite=wgEncodeHudsonalphaChipSeq" -updDb=hg19 -updMdb=tmpMdb -updExp="grant,cell,treatment,antibody,protocol,replicate,view" -updVars="dateSubmitted,dateUnrestricted" > hg18Mdb.txt
wl hg18Mdb.txt 
701 hg18Mdb.txt

chmod 755 hg18Mdb.txt 
./hg18Mdb.txt > mdbUp.out 2>&1

e hg18Mdb.txt # remove '-test'
./hg18Mdb.txt > mdbUp.out 2>&1

# It all worked except!! Damn it, I forgot the dateResubmissted should be this date!

The remapped submissions are
1210*
1224
1225
1226
1227
1239
1240
1241
1242
1252
1258
1261

Newly submitted Chips by June 7th
1130
1143
1150
1151
1158
1171
1172
1180
1188
1215*
1216*
1251*
1253*
1254*

mdbPrint hg19 -table=tmpMdb vars="subId=1215" | grep dateSubmitted
# dates not updated so we are cool.  
# remove origAssembly
mdbUpdate hg19 -table=tmpMdb vars="subId=1215" var=origAssembly -delete -test
mdbUpdate hg19 -table=tmpMdb vars="subId=1215" var=origAssembly -delete 
mdbUpdate hg19 -table=tmpMdb vars="subId=1216" var=origAssembly -delete
mdbUpdate hg19 -table=tmpMdb vars="subId=1251" var=origAssembly -delete
mdbUpdate hg19 -table=tmpMdb vars="subId=1253" var=origAssembly -delete
mdbUpdate hg19 -table=tmpMdb vars="subId=1254" var=origAssembly -delete

# add the dateResubmitted that I accidentally left out!
mdbUpdate hg19 -table=tmpMdb vars="subId=1217" -setVars="dateResubmitted=2010-06-07"
mdbUpdate hg19 -table=tmpMdb vars="subId=1219" -setVars="dateResubmitted=2010-06-07"
mdbUpdate hg19 -table=tmpMdb vars="subId=1222" -setVars="dateResubmitted=2010-06-07"
mdbUpdate hg19 -table=tmpMdb vars="subId=1224" -setVars="dateResubmitted=2010-06-07"
mdbUpdate hg19 -table=tmpMdb vars="subId=1225" -setVars="dateResubmitted=2010-06-07"
mdbUpdate hg19 -table=tmpMdb vars="subId=1226" -setVars="dateResubmitted=2010-06-07"
mdbUpdate hg19 -table=tmpMdb vars="subId=1227" -setVars="dateResubmitted=2010-06-07"
mdbUpdate hg19 -table=tmpMdb vars="subId=1239" -setVars="dateResubmitted=2010-06-04"
mdbUpdate hg19 -table=tmpMdb vars="subId=1240" -setVars="dateResubmitted=2010-06-07"
mdbUpdate hg19 -table=tmpMdb vars="subId=1241" -setVars="dateResubmitted=2010-06-07"
mdbUpdate hg19 -table=tmpMdb vars="subId=1242" -setVars="dateResubmitted=2010-06-07"
mdbUpdate hg19 -table=tmpMdb vars="subId=1252" -setVars="dateResubmitted=2010-06-07"
mdbUpdate hg19 -table=tmpMdb vars="subId=1258" -setVars="dateResubmitted=2010-06-07"
mdbUpdate hg19 -table=tmpMdb vars="subId=1261" -setVars="dateResubmitted=2010-06-07"

# Get the one remap submission that I did not load 
mdbUpdate hg19 -table=tmpMdb 1210/out/mdb.txt
mdbUpdate hg19 -table=tmpMdb -vars="view=RawSignal" -delete -test
mdbUpdate hg19 -table=tmpMdb -vars="view=RawSignal" -delete
Affected 42 row(s) in hg19.tmpMdb
mdbPrint hg19 -table=tmpMdb -all -countObjs -countVars
239 objects
5365 variables
# Limit the hg18 update to the 1210 exp.
grep "H1-hESC" hg18Mdb.txt | grep Pol2 > hg18MdbH1.txt
wl hg18MdbH1.txt
16 hg18MdbH1.txt
chmod 755 hg18MdbH1.txt
./hg18MdbH1.txt
Affected 0 row(s) in hg19.tmpMdb
Affected 2 row(s) in hg19.tmpMdb
Affected 0 row(s) in hg19.tmpMdb
Affected 2 row(s) in hg19.tmpMdb
Affected 0 row(s) in hg19.tmpMdb
Affected 2 row(s) in hg19.tmpMdb
Affected 0 row(s) in hg19.tmpMdb
Affected 2 row(s) in hg19.tmpMdb
...
4 exps updated.
mdbUpdate hg19 -table=tmpMdb vars="subId=1210" -setVars="dateResubmitted=2010-05-25"

# Now go ahead and add all those non-remappings in:
rm tmp.ra
mdbPrint hg19 metaDb -vars="subId=1130" >> tmp.ra
mdbPrint hg19 metaDb -vars="subId=1143" >> tmp.ra
mdbPrint hg19 metaDb -vars="subId=1150" >> tmp.ra
mdbPrint hg19 metaDb -vars="subId=1151" >> tmp.ra
mdbPrint hg19 metaDb -vars="subId=1158" >> tmp.ra
mdbPrint hg19 metaDb -vars="subId=1171" >> tmp.ra
mdbPrint hg19 metaDb -vars="subId=1172" >> tmp.ra
mdbPrint hg19 metaDb -vars="subId=1180" >> tmp.ra
mdbPrint hg19 metaDb -vars="subId=1188" >> tmp.ra
mdbUpdate hg19 -table=tmpMdb tmp.ra
Read 50 metadata objects from hg19
Affected 1068 row(s) in hg19.tmpMdb
# Scrup the wigs
mdbUpdate hg19 -table=tmpMdb -vars="view=RawSignal" -delete -test
mdbUpdate hg19 -table=tmpMdb -vars="view=RawSignal" -delete
Affected 294 row(s) in hg19.tmpMdb
mdbPrint hg19 -table=tmpMdb -all -countObjs -countVars

# run encodeDownoladsPage.pl
# These are still missing!
wgEncodeHaibTfbsGm12878ControlV0416101AlnRep1.bam.gz	  866M	  2010-05-13  	type=bam
wgEncodeHaibTfbsGm12878Taf1Pcr1xAlnRep12.bam.gz	  1.2G	  2010-06-07  	type=bam
wgEncodeHaibTfbsGm12891ControlV0416101AlnRep1.bam.gz	  1021M	  2010-05-13  	type=bam
wgEncodeHaibTfbsGm12892ControlV0416101AlnRep1.bam.gz	  820M	  2010-05-13  	type=bam
wgEncodeHaibTfbsHepg2ControlV0416101AlnRep1.bam.gz	  1.1G	  2010-05-13  	type=bam
wgEncodeHaibTfbsSknmcControlV0416101AlnRep1.bam.gz	  1.2G	  2010-05-13  	type=bam
# Look for them in Venkat's mdb
rm tmp.ra
mdbPrint hg19 -table=metaDb_vsmalladi -obj=wgEncodeHaibTfbsGm12878ControlV0416101AlnRep1 >> tmp.ra
mdbPrint hg19 -table=metaDb_vsmalladi -obj=wgEncodeHaibTfbsGm12878Taf1Pcr1xAlnRep12      >> tmp.ra
mdbPrint hg19 -table=metaDb_vsmalladi -obj=wgEncodeHaibTfbsGm12891ControlV0416101AlnRep1 >> tmp.ra
mdbPrint hg19 -table=metaDb_vsmalladi -obj=wgEncodeHaibTfbsGm12892ControlV0416101AlnRep1 >> tmp.ra
mdbPrint hg19 -table=metaDb_vsmalladi -obj=wgEncodeHaibTfbsHepg2ControlV0416101AlnRep1   >> tmp.ra
mdbPrint hg19 -table=metaDb_vsmalladi -obj=wgEncodeHaibTfbsSknmcControlV0416101AlnRep1   >> tmp.ra
grep subId tmp.ra 
subId 1189
subId 1189
subId 1189
subId 1189
subId 1189
# None should be remaps!
mdbUpdate hg19 -table=tmpMdb tmp.ra
Read 5 metadata objects from hg19
Affected 105 row(s) in hg19.tmpMdb
# Still missing 1: wgEncodeHaibTfbsGm12878Taf1Pcr1xAlnRep12  ### MY TYPO
mv wgEncodeHaibTfbsGm12878Taf1Pcr1xAlnRep12.bam.gz wgEncodeHaibTfbsGm12878Taf1Pcr1xAlnRep1.bam.gz

# All metadata is set.
cd {t19}/metaDb/alpha
mdbPrint hg19 -table=tmpMdb -all -countObjs -countVars
280 objects
6248 variables
mdbPrint hg19 -table=metaDb -vars="composite=wgEncodeHaibTfbs" -countObjs -countVars
333 objects
7121 variables

Difference would seem to be the wigs
mdbPrint hg19 -table=metaDb -vars="composite=wgEncodeHaibTfbs view=RawSignal" -countObjs -countVars
81 objects
1701 variables
mdbPrint hg19 -table=metaDb -vars="composite=wgEncodeHaibTfbs view!=RawSignal" -countObjs -countVars
252 objects
5420 variables

# I want to replace wgEncodeHaibTfbs.ra so
mdbPrint hg19 -table=tmpMdb -all > wgEncodeHaibTfbs.ra

# looks like some non-TFBS stuff was in the old one!
mdbPrint hg19 -table=metaDb -vars="composite=wgEncodeHaibMethylRrbs view!=RawSignal" > wgEncodeHaibMethylRrbs.ra

# a mess so:
rm wgEncodeHaibTfbs
cvs up wgEncodeHaibTfbs.ra
mdbUpdate hg19 -recreate table=metaDb_tdreszer wgEncodeHaibTfbs.ra
mdbPrint hg19 -vars="composite=wgEncodeHaibMethylRrbs" > wgEncodeHaibMethylRrbs.ra
Still only seems like TFBS, so...
mdbPrint hg19 -vars="view=RawSignal" -countObjs -countVars
mdbUpdate hg19 -vars="view=RawSignal" -delete      
Using table named 'hg19.metaDb_tdreszer'.
Affected 1701 row(s) in hg19.metaDb_tdreszer

mdbPrint hg19 -table=tmpMdb -all > wgEncodeHaibTfbs.test
grep Methyl wgEncodeHaibTfbs.test | wl
140
So there is the infection.
mdbUpdate hg19 table=metaDb_tdreszer wgEncodeHaibTfbs.test
Read 280 metadata objects from hg19
Affected 1167 row(s) in hg19.metaDb_tdreszer
mdbPrint hg19 -vars="composite=wgEncodeHaibMethylRrbs" > wgEncodeHaibMethylRrbs.ra
Using table named 'hg19.metaDb_tdreszer'.
objects:28  vars:476
mdbPrint hg19 -vars="composite=wgEncodeHaibTfbs" > wgEncodeHaibTfbs.ra
Using table named 'hg19.metaDb_tdreszer'.
objects:252  vars:5772
mdbUpdate hg19 table=metaDb -replace wgEncodeHaibTfbs.ra

2010-06-21 forgot to update status when tracks were released
============================================================
select id,name,status,user_id from projects where user_id = 8 and status = "reviewing";
+------+----------------------------------------------------+-----------+---------+
| id   | name                                               | status    | user_id |
+------+----------------------------------------------------+-----------+---------+
|    6 | HudsonAlpha PFSK-1/SK-N-MC Control                 | reviewing |       8 | 
|    7 | HudsonAlpha PFSK-1/SK-N-MC FOXP2                   | reviewing |       8 | 
|  259 | HudsonAlpha_ChIPSeq_Sin3Ak-20_K562_GM12878_Feb2709 | reviewing |       8 | 
|  260 | HudsonAlpha_ChIPSeq_Egr-1_K562_GM12878_Feb2709     | reviewing |       8 | 
|  261 | HudsonAlpha_ChIPSeq_USF-1_K562_GM12878_Feb2709     | reviewing |       8 | 
|  262 | HudsonAlpha_ChIPSeq_CONTROL_K562_GM12878_Feb2709   | reviewing |       8 | 
|  268 | HudsonAlpha_ChIP-Seq-FEB09_FASTQ                   | reviewing |       8 | 
|  422 | HudsonAlpha_GM12878_Jul-09                         | reviewing |       8 | 
|  432 | HudsonAlpha_HepG2_Jul-09                           | reviewing |       8 | 
|  433 | HudsonAlpha_HeLa_Jul-09                            | reviewing |       8 | 
|  434 | HudsonAlpha_U87_Jul-09                             | reviewing |       8 | 
|  435 | HudsonAlpha_PANC1_Jul-09                           | reviewing |       8 | 
|  436 | HudsonAlpha_PFSK1_Jul-09                           | reviewing |       8 | 
|  437 | HudsonAlpha_BE2C_Jul-09                            | reviewing |       8 | 
|  438 | HudsonAlpha_HTB11_Jul-09                           | reviewing |       8 | 
|  741 | HudsonAlpha_ChIP-seq_Oct-09                        | reviewing |       8 | 
|  756 | HudsonAlpha_ChIP-seq_Oct-09_noReps                 | reviewing |       8 | 
|  759 | HudsonAlpha_ChIP-seq_Oct-09_RestOf                 | reviewing |       8 | 
|  768 | HAIBChIPseq_RawData_Oct09                          | reviewing |       8 | 
|  774 | HudsonAlpha_GR_ChIP-seq                            | reviewing |       8 | 
|  776 | HudsonAlpha_ChIP-seq_HepG2_GABPa-Nov09             | reviewing |       8 | 
|  780 | HudsonAlpha_ChIP-seq_HepG2_TAF250-Nov09            | reviewing |       8 | 
|  781 | HudsonAlpha_ChIP-seq_HeLa_GABPa-Nov09              | reviewing |       8 | 
|  782 | HudsonAlpha_ChIP-seq_HeLa_TAFIIp250-Nov09          | reviewing |       8 | 
|  783 | HudsonAlpha_ChIP-seq_GM12878_Bcl11a-Nov09          | reviewing |       8 | 
|  795 | HAIB_Chipseq_p300_GM12878-Nov09                    | reviewing |       8 | 
|  798 | HudsonAlpha_Chipseq_ZBTB33_GM12878-Nov09           | reviewing |       8 | 
|  801 | Hudsonalpha_Chipseq_A549_GR_5nMDex_09Dec           | reviewing |       8 | 
|  802 | HudsonAlpha_Chipseq_A549_GR_50nMDex_Dec09          | reviewing |       8 | 
|  803 | HudsonAlpha_Chipseq_A549_GR_500pMDex_Dec09         | reviewing |       8 | 
|  804 | HudsonAlpha_Chipseq_GM12878_Pax5_c20_Dec09         | reviewing |       8 | 
|  814 | HudsonAlpha_Chipseq_hESC_NRSF_Dec09                | reviewing |       8 | 
|  806 | HudsonAlpha_Chipseq_GM12878_Pax5-N19_Dec09         | reviewing |       8 | 
|  807 | HudsonAlpha_Chipseq_K562_TAF1_Dec09                | reviewing |       8 | 
|  809 | HudsonAlpha_Chipseq_A549_Pol2_Dex_Dec09            | reviewing |       8 | 
|  812 | HudsonAlpha_Chipseq_GM12878_Bcl3_Dec09             | reviewing |       8 | 
|  813 | HudsonAlpha_ChIPSeq_A549_Pol2_1hEtOH_Dec09         | reviewing |       8 | 
|  832 | HudsonAlpha_Chipseq_ZBTB33_HepG2                   | reviewing |       8 | 
|  830 | HudsonAlpha_Chipseq_GM12878_Sp1                    | reviewing |       8 | 
|  833 | HudsonAlpha_ChIPSeq_H1-hESC_Taf1                   | reviewing |       8 | 
|  867 | HAIB_Chipseq_HepG2_FosL2                           | reviewing |       8 | 
|  876 | HAIB_Chipseq_HepG2_HEY1_Dec09                      | reviewing |       8 | 
|  878 | HAIB_Chipseq_HepG2_RXRA_Dec09                      | reviewing |       8 | 
|  879 | HAIB_Chipseq_H1-hESC_Pol2_Dec09                    | reviewing |       8 | 
| 1191 | HudsonAlpha_ReloadedFastqFiles                     | reviewing |       8 | 
| 1060 | HudsonAlpha_Chipseq_Dec1_HepG2_Jan10               | reviewing |       8 | 
| 1028 | HudsonAlpha_Chipseq_Jurkat_Pol2_Jan10              | reviewing |       8 | 
| 1003 | HudsonAlpha_Chipseq_CTCF_A549_EtOH_Jan10           | reviewing |       8 | 
|  994 | HudsonAlpha_ChIP-seq_GM12892_TAF1_Jan10            | reviewing |       8 | 
|  980 | HudsonAlpha_ChIP-seq_GM12892_Pol2_Jan10            | reviewing |       8 | 
|  981 | HudsonAlpha_ChIP-seq_GM12892_Pol2-4H8_Jan10        | reviewing |       8 | 
|  978 | HudsonAlpha_Chipseq_Oct2_GM12891_Jan10             | reviewing |       8 | 
|  979 | HudsonAlpha_ChIP-seq_GM12891_TAF1_Jan10            | reviewing |       8 | 
|  977 | HudsonAlpha_Chipseq_pol2WG-GM12891_Jan10           | reviewing |       8 | 
|  976 | HAIB_Chipseq_pol2-4H8-GM12891                      | reviewing |       8 | 
|  880 | HAIB FASTQ_Submissions_Dec09                       | reviewing |       8 | 
|  899 | HudsonAlpha_Chipseq_A549_CTCF_Jan10                | reviewing |       8 | 
|  913 | HudsonAlpha_ChipSeq_USF1_A549_Dex_Jan10            | reviewing |       8 | 
|  901 | HudsonAlpha__Chipseq_A549_USF1_Jan10               | reviewing |       8 | 
|  920 | HudsonAlpha_Chipseq_Pol2-4H8_GM12878_Jan10         | reviewing |       8 | 
|  958 | HudsonAlpha_Chipseq_Pol2-4H8_hESC_Jan10            | reviewing |       8 | 
|  973 | HudsonAlpha_ChIP-seq_GM12891_SPI1_Jan10            | reviewing |       8 | 
+------+----------------------------------------------------+-----------+---------+
62 rows in set (0.00 sec)
/cluster/data/encode/pipeline/bin/encodeStatus.pl    6 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl    7 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  259 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  260 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  261 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  262 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  268 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  422 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  432 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  433 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  434 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  435 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  436 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  437 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  438 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  741 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  756 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  759 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  768 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  774 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  776 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  780 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  781 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  782 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  783 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  795 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  798 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  801 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  802 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  803 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  804 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  814 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  806 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  807 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  809 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  812 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  813 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  832 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  830 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  833 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  867 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  876 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  878 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  879 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl 1191 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl 1060 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl 1028 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl 1003 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  994 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  980 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  981 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  978 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  979 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  977 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  976 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  880 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  899 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  913 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  901 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  920 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  958 released
/cluster/data/encode/pipeline/bin/encodeStatus.pl  973 released
select id,name,status,user_id from projects where user_id = 8 and status = "reviewing";
Empty set (0.00 sec)

2010-06-22 Change all those downloads to displayed
==================================================
select id,name,status,user_id from projects where status = "downloads" and user_id = 8 order by id;
+------+--------------------------------------------------------+-----------+---------+
| id   | name                                                   | status    | user_id |
+------+--------------------------------------------------------+-----------+---------+
| 1215 | HudsonAlpha_ChIP_hESC_EGR1_May10                       | downloads |       8 | 
| 1216 | HudsonAlpha_ECC1_ESR1sc-543_May10                      | downloads |       8 | 
| 1224 | HudsonAlpha_ChIP_RaisedLibraries_GM12891_May10         | downloads |       8 | 
| 1225 | HudsonAlpha_ChIP_RaisedLibraries_GM12892_May10         | downloads |       8 | 
| 1226 | HudsonAlpha_ChIP_RaisedLibraries_hESC_May10            | downloads |       8 | 
| 1227 | HudsonAlpha_ChIP_RaisedLibraries_HepG2_BioRupter_May10 | downloads |       8 | 
| 1239 |        HudsonAlpha_ChIP_RaisedLibraries_HepG21PCR_June10    | downloads |       8 | 
| 1240 |        HudsonAlpha_ChIP_RaisedLibraries_K562_1PCR_June10    | downloads |       8 | 
| 1241 |        HudsonAlpha_ChIP_RaisedLibraries_GM12878_1PCR_June10 | downloads |       8 | 
| 1242 |        HudsonAlpha_ChIP_RaisedLibraries_Hela_1PCR_June10    | downloads |       8 | 
| 1251 | HudsonAlpha_ChIPseq_HEB_HepG2_June10                   | downloads |       8 | 
| 1252 | HudsonAlpha_ChIPseq_Six5_GM12878_June10                | downloads |       8 | 
| 1253 | HudsonAlpha_ChIPseq_RxRalpha_GM12878_June10            | downloads |       8 | 
| 1254 | HudsonAlpha_ChIPseq_GR_ECC1-Dex_June10                 | downloads |       8 | 
| 1258 | HudsonAlpha_ChIPseq_A549_Raised_June10_Set1            | downloads |       8 | 
| 1261 | HudsonAlpha_ChIP_RandomRaised_June10_Set1              | downloads |       8 | 
+------+--------------------------------------------------------+-----------+---------+
16 rows in set (0.00 sec)
/cluster/data/encode/pipeline/bin/encodeStatus.pl 1215 displayed -force
/cluster/data/encode/pipeline/bin/encodeStatus.pl 1216 displayed -force
/cluster/data/encode/pipeline/bin/encodeStatus.pl 1224 displayed -force
/cluster/data/encode/pipeline/bin/encodeStatus.pl 1225 displayed -force
/cluster/data/encode/pipeline/bin/encodeStatus.pl 1226 displayed -force
/cluster/data/encode/pipeline/bin/encodeStatus.pl 1227 displayed -force
/cluster/data/encode/pipeline/bin/encodeStatus.pl 1239 displayed -force
/cluster/data/encode/pipeline/bin/encodeStatus.pl 1240 displayed -force
/cluster/data/encode/pipeline/bin/encodeStatus.pl 1241 displayed -force
/cluster/data/encode/pipeline/bin/encodeStatus.pl 1242 displayed -force
/cluster/data/encode/pipeline/bin/encodeStatus.pl 1251 displayed -force
/cluster/data/encode/pipeline/bin/encodeStatus.pl 1252 displayed -force
/cluster/data/encode/pipeline/bin/encodeStatus.pl 1253 displayed -force
/cluster/data/encode/pipeline/bin/encodeStatus.pl 1254 displayed -force
/cluster/data/encode/pipeline/bin/encodeStatus.pl 1258 displayed -force
/cluster/data/encode/pipeline/bin/encodeStatus.pl 1261 displayed -force
select id,name,status,user_id from projects where status = "downloads" and user_id = 8 order by id;
Empty set (0.00 sec)
